MAGINE documentation
====================
Welcome to MAGINEs documentation. MAGINE was created to help organize and analyze modern high throughput data.
Specifically, we designed it for multi-sample (time series, drug dose, experimental conditions) and multiple omics platform (RNAseq, ph-silac, silac, label-free, metabolomics).
The tools are designed to organize and explore raw data.
- Organize data
- Automate enrichment analysis
- Enable sample series enrichment exploration
- Integrate network and enrichment analysis



.. figure:: ./magine_capabilities_demo.png
   :scale: 50 %
   :align: center


MAGINE environment.


MAGINE has four main modules
    - Data
    - Enrichment
    - Networks
    - Tools

Our Data classes are built to organize and facilitate exploration for both the raw data and the analysis.
The data class is the central structure that enables this.


Table of contents
-----------------

.. toctree::
   :maxdepth: 2

   installation
   overview
   Tutorial.rst
   modules/index


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`